brainconn.utils.visualization

Tools for visualizing graphs.

Functions

adjacency_plot_und(A, coor[, tube])	This function in matlab is a visualization helper which translates an adjacency matrix and an Nx3 matrix of spatial coordinates, and plots a 3D isometric network connecting the undirected unweighted nodes using a specific plotting format.
align_matrices(m1, m2[, dfun, verbose, H, …])	This function aligns two matrices relative to one another by reordering the nodes in M2.
backbone_wu(CIJ, avgdeg)	The network backbone contains the dominant connections in the network and may be used to aid network visualization.
grid_communities(c)	(X,Y,INDSORT) = GRID_COMMUNITIES(C) takes a vector of community assignments C and returns three output arguments for visualizing the communities.
reorderMAT(m[, H, cost])	This function reorders the connectivity matrix in order to place more edges closer to the diagonal.
reorder_matrix(m1[, cost, verbose, H, Texp, …])	This function rearranges the nodes in matrix M1 such that the matrix elements are squeezed along the main diagonal.
reorder_mod(A, ci)	This function reorders the connectivity matrix by modular structure and may hence be useful in visualization of modular structure.
writetoPAJ(CIJ, fname, directed)	This function writes a Pajek .net file from a numpy matrix